Introduction

I am a computer programer. My expertise is in proteomics and bioinformatics. I like to develop the softwares and web applications. Welcome to my code repository for proteomics and bioinformatics. Enjoy it! If you meet any questions, please contact: wjlong0318@163.com.

Proteomics Tools

Downloads the tools:
code downloads(sf)
code downloads(github)

GlycanDenovo

GlycanDenovo is a web-based application for glycan denovo.

CyanoAtlas

CyanoAtlas is a web-based database for storing and sharing the protein localization information. The localization information of each quantified protein in Synechocystis sp. PCC 6803 is accessible through searching the database using CyanoBase accession number (e.g. sll0567) or gene symbol (e.g. PsaA), and can be visualized by the bar graph.

OxoniumIonCount

OxoniumIonCount is a tool for calculating the numbers of oxonium ions from the MGF files which are converted from the mass spectrum RAW files. The files including the information of oxonium ions and retention time will be output.

IDconvert.pl

Downloads script/IDconvert.pl 20170804
function:fasta file blast fasta file for id matching
out file, seperated with comma, can be opened by excel
out file format:
query,subject,Identities,query match length,mismatches,
gap openings,query start,query end,sbject start,sbject end,E Value,Score
blastp -evalue 0.000001
Usage: perl IDconvert.pl [filepath]
Usage: if you do not use parameter,
you could put two fasta files and IDconvert.pl file into same folder,
then double-click
Example: 
	perl IDconvert.pl [input]

AllMerge.pl

Downloads script/AllMerge.pl 20170804
function:merging mutilfiles(CSV) bases on left colume
version:1.01
Usage: perl AllMerge.pl [filepath]
Usage: if you do not use parameter,
you could put all csv files and AllMerge.pl file into same folder,
then Double-click
Example: 
					 perl Almerge.pl [input]

csv2fasta.pl

Downloads script/csv2fasta.pl 20170804
function:convert csv to fasta
version:1.01
Usage: perl csv2fasta.pl [filepath]
Usage: if you do not use parameter,
you could put all csv files and csv2fasta.pl file into same folder,
double-click
Example: 
perl csv2fasta.pl [input]

fasta2csv.pl

Downloads script/fasta2csv.pl 20170804
function:convert fasta to csv
version:1.01
Usage: perl fasta2csv.pl [filepath]
Usage: if you do not use parameter,
you could put all csv files and fasta2csv.pl file into same folder,
double-click
Example: 
perl fasta2csv.pl [input]

md5.pl

Downloads script/md5.pl 20170804
function:caculate MD5 value of all files in current folder
version:1.01
Usage:put all files and MD5.pl file into same folder,double-click